Where does gFTP store it's options?

gFTP will automatically create a ~/.gftp directory when it is first run. Your config file is ~/.gftp/gftprc, and this is where all of gFTP's settings are stored. The config file is well commented, so take a glance at it and see if there is anything you want to change. Your bookmarks are stored in the file ~/.gftp/bookmarks.

Every time gFTP is run, it will log the contents of the log window to ~/.gftp/gftp.log. The contents of this file will be automatically purged this file when gFTP is started up.